rvista dcode.org

rVista 2.0 Identification of Evolutionary Conserved Transcription Factor Binding Sites

Http rvista . dcode . org. Finding potential regulatory elements in noncoding regions of the human genome is a challenging problem. Analyzing novel sequences for the presence of known transcription factor binding sites or their weight matrices produces a huge number of false positive predictions that are randomly and uniformily distributed. rVista. Combines database searches with comparative sequence analysis, reducing the number of false positive predictions by 95. If you have two sequence files.

OVERVIEW

The domain rvista.dcode.org presently has a traffic ranking of zero (the lower the more traffic). We have parsed one page within the web site rvista.dcode.org and found twenty-two websites referencing rvista.dcode.org.
Pages Parsed
1
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22

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LINKS TO WEBSITE

Bitnos, the best biomedical web applications and search tools! Free!

Bitnos is a free and collaborative Online Operating System that provides you all the best biomedical free web applications. Surf the website using the left sidebar and click on the star symbol. To insert here your favourite web applications. Physicochemical analysis of the primers. Protein structure and function prediction.

dcode . org NCBI Dcode.org Comparative Genomics Developments

Combining multiple methods developed by the community to predict causal noncoding variants. Prediction of regulatory motifs and motif combinations in a set of co-functional enhancers. Identification of proximal and Di. Prediction of synonymous regulatory elements in vertebrate genomes. Evolutionary conservation of multiple genomes. Identification and sequence analysis of regulatory elements.

DiRE identification of DIstant Regulatory Elements of co-regulated genes

Copy and paste gene names. Copy and paste background genes.

ECRbase Database of Evolutionary Conserved Regions, Promoters, and Transcription Factor Binding Sites in Vertebrate Genomes

We have recently modified ECR Browser alignments by including repetitive elements. All ECRbase ECRs correspond to new ECR Browser alignments now. Additionally, individual ECRs have been annotated according to their relationship to RefSeq genes and repetitive elements. And Transcription Factor Binding Sites in Vertebrate Genomes. Of RefSeq and UCSC known genes.

ECR Browser Evolutionary Conservation of Genomes

Zoom out 3x, i. Shift to the right,. Shift to the left, l. Flip the plot, g. Genome selection window, p. Reset parameters to defaults, f. Refresh the page, a. Main gene annotation, z.

eShadow phylogenetic shadowing

Return to previously processed request.

Jorge Fernandes

I am a Professor in Genomics and Molecular Biology at the University of Nordland. I have an honorary professorship at the University of Messina. I am also an academic editor for PLoS One. Faculty of Biosciences and Aquaculture. 47 75 51 77 36.

ONLINE ANALYSIS TOOLS

TERTIARY STRUCTURE PREDICTIONS OF SACCHARIDES.

Mulan MUltple sequence Local AligNment and visualization tool

Performs local multiple DNA sequence alignments of finished and draft-quality sequences. It identifies transcription factor binding sites evolutionarily conserved across multiple species. Return to previously submitted request.

multiTF Identification of Transcription Factor Binding Sites Conserved in Multiple Species

Identifies transcription factor binding sites conserved across multiple species. Multiple sequence alignments of FINISHED sequences can be automatically submitted to multiTF from the results web page. Automatically forwards genome alignment data to Mulan for the subsequent multiTF post-processing. Return to previously submitted request.

WHAT DOES RVISTA.DCODE.ORG LOOK LIKE?

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RVISTA.DCODE.ORG SERVER

We revealed that the main page on rvista.dcode.org took two hundred and ninety-seven milliseconds to come up. I could not find a SSL certificate, so therefore I consider this site not secure.
Load time
0.297 sec
SSL
NOT SECURE
IP
130.14.29.110

SERVER SOFTWARE

We discovered that rvista.dcode.org is implementing the Apache server.

SITE TITLE

rVista 2.0 Identification of Evolutionary Conserved Transcription Factor Binding Sites

DESCRIPTION

Http rvista . dcode . org. Finding potential regulatory elements in noncoding regions of the human genome is a challenging problem. Analyzing novel sequences for the presence of known transcription factor binding sites or their weight matrices produces a huge number of false positive predictions that are randomly and uniformily distributed. rVista. Combines database searches with comparative sequence analysis, reducing the number of false positive predictions by 95. If you have two sequence files.

PARSED CONTENT

The domain had the following on the web page, "Finding potential regulatory elements in noncoding regions of the human genome is a challenging problem." I observed that the web site said " Analyzing novel sequences for the presence of known transcription factor binding sites or their weight matrices produces a huge number of false positive predictions that are randomly and uniformily distributed." They also stated " Combines database searches with comparative sequence analysis, reducing the number of false positive predictions by 95. If you have two sequence files."

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