Bitnos is a free and collaborative Online Operating System that provides you all the best biomedical free web applications. Surf the website using the left sidebar and click on the star symbol. To insert here your favourite web applications. Physicochemical analysis of the primers. Protein structure and function prediction.

CREME has been retired and was replaced by DiRE. First, thank you all Creme users! Your interest in Creme has kept this service alive for over 4 years. Unfortunately, Creme has become outdated. It was operating on a very old version of the human genome. It was using outdated version of the TRANSFAC database. It was limited to the promoter regions of RefSeq genes only. Finally, we decided to retire the service.

Combining multiple methods developed by the community to predict causal noncoding variants. Prediction of regulatory motifs and motif combinations in a set of co-functional enhancers. Identification of proximal and Di. Prediction of synonymous regulatory elements in vertebrate genomes. Evolutionary conservation of multiple genomes. Identification and sequence analysis of regulatory elements.

We have recently modified ECR Browser alignments by including repetitive elements. All ECRbase ECRs correspond to new ECR Browser alignments now. Additionally, individual ECRs have been annotated according to their relationship to RefSeq genes and repetitive elements. And Transcription Factor Binding Sites in Vertebrate Genomes. Of RefSeq and UCSC known genes.

Zoom out 3x, i. Shift to the right,. Shift to the left, l. Flip the plot, g. Genome selection window, p. Reset parameters to defaults, f. Refresh the page, a. Main gene annotation, z.

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Performs local multiple DNA sequence alignments of finished and draft-quality sequences. It identifies transcription factor binding sites evolutionarily conserved across multiple species. Return to previously submitted request.

Identifies transcription factor binding sites conserved across multiple species. Multiple sequence alignments of FINISHED sequences can be automatically submitted to multiTF from the results web page. Automatically forwards genome alignment data to Mulan for the subsequent multiTF post-processing. Return to previously submitted request.

Finding potential regulatory elements in noncoding regions of the human genome is a challenging problem. Analyzing novel sequences for the presence of known transcription factor binding sites or their weight matrices produces a huge number of false positive predictions that are randomly and uniformily distributed. If you have two sequence files.

Bps, but not more than. Fix the order of TFBS. Return to previously submitted request.